TF_ChIP-seq_ENCSR000BGD
TF_ChIP-seq ENCSR000BGD [biosample_summary="Homo sapiens GM12878" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000BGD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BGD [biosamplesummary="Homo sapiens GM12878" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN442QXS|/analyses/ENCAN442QXS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF865BUP|/files/ENCFF865BUP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19981239 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF865BUP|/files/ENCFF865BUP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF591BQK|/files/ENCFF591BQK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGD | float |
TF_ChIP-seq_ENCSR000BGD |
TF_ChIP-seq ENCSR000BGD [biosample_summary="Homo sapiens GM12878" and target="POLR2A"]
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[5.58, 533] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF120VUT.bed.gz | 800.86 KB | bca31e848a128f562b9082c678c3ad04 |
| ENCFF120VUT.bed.gz.dvc | 100.0 B | a3dc471a3d939f21e19fdde567c9c8c6 |
| ENCFF120VUT.tabix.bed.gz | 518.95 KB | 09a74248e52b48891830cc7992bff648 |
| ENCFF120VUT.tabix.bed.gz.dvc | 106.0 B | e345d989273c9e7082f485cea0348755 |
| ENCFF120VUT.tabix.bed.gz.tbi | 144.09 KB | 28cedbbc3af8b5240d956dd4035639b5 |
| ENCFF120VUT.tabix.bed.gz.tbi.dvc | 110.0 B | 761e8655ffdfae1ca8247b0f807b9ef8 |
| genomic_resource.yaml | 3.39 KB | 66ba998e9e7f0ad319854ae76100864e |
| genomic_resource_original.yaml | 3.29 KB | 026b6fa6dfd1d783c76d4ca82634ef8d |
| statistics/ |