TF_ChIP-seq_ENCSR000BGA
TF_ChIP-seq ENCSR000BGA [biosample_summary="Homo sapiens PFSK-1" and target="FOXP2"]
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| Id: | TF_ChIP-seq/ENCSR000BGA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BGA [biosamplesummary="Homo sapiens PFSK-1" and target="FOXP2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_error: Processed alignments file {ENCFF054FYX|/files/ENCFF054FYX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3695969 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXP2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Archived analysis {ENCAN379GUS|/analyses/ENCAN379GUS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF320MKV|/files/ENCFF320MKV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8161038 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXP2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF395BZZ|/files/ENCFF395BZZ/}, {ENCFF260VMG|/files/ENCFF260VMG/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.59 and a self consistency ratio of 9.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF794IDP|/files/ENCFF794IDP/}, {ENCFF299QQS|/files/ENCFF299QQS/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.59 and a self consistency ratio of 9.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGA | float |
TF_ChIP-seq_ENCSR000BGA |
TF_ChIP-seq ENCSR000BGA [biosample_summary="Homo sapiens PFSK-1" and target="FOXP2"]
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[2.27, 217] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF395BZZ.bed.gz | 295.48 KB | 4e19b95df0695a93ba3dc403d0d64995 |
| ENCFF395BZZ.bed.gz.dvc | 100.0 B | 3fe59e868598b437a2d520490d9e0e40 |
| ENCFF395BZZ.tabix.bed.gz | 233.64 KB | ec3403fb1cbb6bf83f47f4dd82b53313 |
| ENCFF395BZZ.tabix.bed.gz.dvc | 106.0 B | fa6bde17513d28d7ecc2cd34551906fe |
| ENCFF395BZZ.tabix.bed.gz.tbi | 126.34 KB | 0c64bc658446831407b9a69a47dd561f |
| ENCFF395BZZ.tabix.bed.gz.tbi.dvc | 110.0 B | 3d7dfa9e9f91f3df0deaf9167968cdfc |
| genomic_resource.yaml | 3.51 KB | 4b63f6b7efc20ef15d7430602465a4df |
| genomic_resource_original.yaml | 3.42 KB | c6acdc5f47986456318fb92bb1864f66 |
| statistics/ |