TF_ChIP-seq_ENCSR000AVD
TF_ChIP-seq ENCSR000AVD [biosample_summary="Homo sapiens K562" and target="CHD7"]
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| Id: | TF_ChIP-seq/ENCSR000AVD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000AVD [biosamplesummary="Homo sapiens K562" and target="CHD7"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN331WJB|/analyses/ENCAN331WJB/} has in progress subobject document {cb49c211-3ec8-44f2-baa4-a85fa7ea6d0c|/documents/cb49c211-3ec8-44f2-baa4-a85fa7ea6d0c/} audit_internal_action: Released analysis {ENCAN331WJB|/analyses/ENCAN331WJB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF719VML|/files/ENCFF719VML/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19613110 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CHD7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF719VML|/files/ENCFF719VML/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF719VML|/files/ENCFF719VML/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000AVD | float |
TF_ChIP-seq_ENCSR000AVD |
TF_ChIP-seq ENCSR000AVD [biosample_summary="Homo sapiens K562" and target="CHD7"]
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[3.46, 284] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF722UJW.bed.gz | 20.28 KB | f9d7e0d4f7f3bd5c6d470cbfa3ff4d49 |
| ENCFF722UJW.bed.gz.dvc | 99.0 B | af0afa2f463a27ce36be645ad5cc3851 |
| ENCFF722UJW.tabix.bed.gz | 14.49 KB | e407a435be96bdf4e784bf4e34d28847 |
| ENCFF722UJW.tabix.bed.gz.dvc | 105.0 B | f94afa25cce618c4b2eb1680b11736a3 |
| ENCFF722UJW.tabix.bed.gz.tbi | 13.99 KB | ba8a4b0bbf8d8ae66d0469bebdc2d30d |
| ENCFF722UJW.tabix.bed.gz.tbi.dvc | 109.0 B | f316f406d24d7ac5f41401eb4843af96 |
| genomic_resource.yaml | 3.37 KB | 2d8f07e0d77d40b30a0de20adce5b3e6 |
| genomic_resource_original.yaml | 3.27 KB | 7d239273a49e0874e012faa2c93f9591 |
| statistics/ |