TF_ChIP-seq_ENCSR000ATT
TF_ChIP-seq ENCSR000ATT [biosample_summary="Homo sapiens K562" and target="CREBBP"]
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| Id: | TF_ChIP-seq/ENCSR000ATT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ATT [biosamplesummary="Homo sapiens K562" and target="CREBBP"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN854TSG|/analyses/ENCAN854TSG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN854TSG|/analyses/ENCAN854TSG/} has in progress subobject document {f07105d9-5872-48a2-9cdc-c6827b28e05b|/documents/f07105d9-5872-48a2-9cdc-c6827b28e05b/} audit_warning: Processed alignments file {ENCFF211DSN|/files/ENCFF211DSN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16510494 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CREBBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF211DSN|/files/ENCFF211DSN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF211DSN|/files/ENCFF211DSN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ATT | float |
TF_ChIP-seq_ENCSR000ATT |
TF_ChIP-seq ENCSR000ATT [biosample_summary="Homo sapiens K562" and target="CREBBP"]
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[3.14, 87.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF532VPN.bed.gz | 13.6 KB | 1303ae8e875e1334ba083f640bdb00ce |
| ENCFF532VPN.bed.gz.dvc | 99.0 B | 57d5c07aa55ee13063cc7883a69c3cdd |
| ENCFF532VPN.tabix.bed.gz | 9.76 KB | 655630ce53793bd831a81dc44ba9339f |
| ENCFF532VPN.tabix.bed.gz.dvc | 104.0 B | c6ecf4514bcfb941c10433e6a5f83640 |
| ENCFF532VPN.tabix.bed.gz.tbi | 12.77 KB | d94f89781f45e10a526fcc2d7aeb163b |
| ENCFF532VPN.tabix.bed.gz.tbi.dvc | 109.0 B | 103fd35596685470b07da2c57b0e56ff |
| genomic_resource.yaml | 3.38 KB | 56f54478951c43c9c774ad68e08d6548 |
| genomic_resource_original.yaml | 3.28 KB | e18332922ee70422b50718ba7831ece8 |
| statistics/ |