Resource

Id TF_ChIP-seq/ENCSR000ATQcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000ATQ [biosample_summary="Homo sapiens H1" and target="HDAC6"]
Description
Labels
  • accession: ENCSR000ATQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2013-11-07T22:16:02.121043+00:00
  • date_released: 2012-08-06
  • doi: 10.17989/ENCSR000ATQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: HDAC6

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000ATQ float

TF_ChIP-seq_ENCSR000ATQ

TF_ChIP-seq ENCSR000ATQ [biosample_summary="Homo sapiens H1" and target="HDAC6"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000ATQ [5.32, 44.4]
n
28,160
mean
15.5
sd
6.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 28160<0.01% 176
chr1 3840 <0.01% 24
chr2 1280 <0.01% 8
chr3 1600 <0.01% 10
chr4 1280 <0.01% 8
chr5 800 <0.01% 5
chr6 1440 <0.01% 9
chr7 1920 <0.01% 12
chr8 640 <0.01% 4
chr9 960 <0.01% 6
chr10 1120 <0.01% 7
chr11 1280 <0.01% 8
chr12 1440 <0.01% 9
chr13 640 <0.01% 4
chr14 320 <0.01% 2
chr15 960 <0.01% 6
chr16 1280 <0.01% 8
chr17 3840 <0.01% 24
chr18 480 <0.01% 3
chr19 1120 <0.01% 7
chr20 800 <0.01% 5
chr21 320 <0.01% 2
chr22 480 <0.01% 3
chrX 320 <0.01% 2
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 176 160 160 160 160
global segment-length histogram

Files

Filename Size md5
ENCFF012LET.bed.gz 3.14 KB 0c5b65791d9f27ba4c8d0a07a4e64a49
ENCFF012LET.tabix.bed.gz 2.17 KB 15053d573392a326754100cbbebc7362
ENCFF012LET.tabix.bed.gz.tbi 5.57 KB 95ba4499883ef4bc4a54c4e2f76d5d0b
genomic_resource.yaml 3.67 KB 2c955600f9480a4df0c0cd74dbc9f3f9
statistics/