TF_ChIP-seq_ENCSR000ATC
TF_ChIP-seq ENCSR000ATC [biosample_summary="Homo sapiens HeLa-S3" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR000ATC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ATC [biosamplesummary="Homo sapiens HeLa-S3" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN753MZA|/analyses/ENCAN753MZA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF162NDI|/files/ENCFF162NDI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF162NDI|/files/ENCFF162NDI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ATC | float |
TF_ChIP-seq_ENCSR000ATC |
TF_ChIP-seq ENCSR000ATC [biosample_summary="Homo sapiens HeLa-S3" and target="EZH2"]
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[9.88, 272] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF751GGI.bed.gz | 56.07 KB | 7aedab00b9f60d6da4433352c11c9015 |
| ENCFF751GGI.bed.gz.dvc | 99.0 B | 82dbb53c5c63adfc3df8c20bf36edd46 |
| ENCFF751GGI.tabix.bed.gz | 43.4 KB | bf7c17cc92b5f4774c9cf58633c187ea |
| ENCFF751GGI.tabix.bed.gz.dvc | 105.0 B | 3f9a147aa0d99b3abac1d60c5fd62f4b |
| ENCFF751GGI.tabix.bed.gz.tbi | 24.97 KB | 41f009c37d6223402525c0fb48ab7916 |
| ENCFF751GGI.tabix.bed.gz.tbi.dvc | 109.0 B | 32ac0b959eac0a9410c0d33ce3178b91 |
| genomic_resource.yaml | 2.65 KB | 0c0de71674dfca73f6227607ceeef39c |
| genomic_resource_original.yaml | 2.55 KB | 4dca0bc8b88fd92bc3237f0227449d0c |
| statistics/ |