TF_ChIP-seq_ENCSR000ARR
TF_ChIP-seq ENCSR000ARR [biosample_summary="Homo sapiens astrocyte" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR000ARR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ARR [biosamplesummary="Homo sapiens astrocyte" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN386LLN|/analyses/ENCAN386LLN/} has in progress subobject document {dd83aa67-b70c-4041-a528-69f1c1b578ea|/documents/dd83aa67-b70c-4041-a528-69f1c1b578ea/} audit_internal_action: Released analysis {ENCAN386LLN|/analyses/ENCAN386LLN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF941MJS|/files/ENCFF941MJS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7166764 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF039XTW|/files/ENCFF039XTW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF039XTW|/files/ENCFF039XTW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ARR | float |
TF_ChIP-seq_ENCSR000ARR |
TF_ChIP-seq ENCSR000ARR [biosample_summary="Homo sapiens astrocyte" and target="EZH2"]
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[6.24, 197] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF262LQF.bed.gz | 248.09 KB | 4d623a409191864f1d11b18ef5aaeafe |
| ENCFF262LQF.bed.gz.dvc | 100.0 B | 89e13a85644a007a0578af444bddb38a |
| ENCFF262LQF.tabix.bed.gz | 165.92 KB | 4f3744f356c3d2678f5c7fb7650671d2 |
| ENCFF262LQF.tabix.bed.gz.dvc | 106.0 B | 771bc0b88f419ff519a941c9eedf7e81 |
| ENCFF262LQF.tabix.bed.gz.tbi | 48.77 KB | 1da8797d9c2eff49af8ca3cb0158e31d |
| ENCFF262LQF.tabix.bed.gz.tbi.dvc | 109.0 B | 6465fa7841ad54377feb1423500959d4 |
| genomic_resource.yaml | 3.39 KB | 94c1d4bea3c994b0999a9b0456a59bdf |
| genomic_resource_original.yaml | 3.29 KB | 38c39308771c624a7068a22a0337f9a8 |
| statistics/ |