TF_ChIP-seq_ENCSR000ARO
TF_ChIP-seq ENCSR000ARO [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR000ARO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ARO [biosamplesummary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (11 years) male adult (45 years) output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF279MNV|/files/ENCFF279MNV/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN658MAN|/analyses/ENCAN658MAN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF171PUL|/files/ENCFF171PUL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF171PUL|/files/ENCFF171PUL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF072QPI|/files/ENCFF072QPI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF072QPI|/files/ENCFF072QPI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.18. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ARO | float |
TF_ChIP-seq_ENCSR000ARO |
TF_ChIP-seq ENCSR000ARO [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="EZH2"]
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[11.5, 278] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF279MNV.bed.gz | 238.63 KB | 904092bb16cdb31e52d6d49c5f484e24 |
| ENCFF279MNV.bed.gz.dvc | 100.0 B | fd2af419f4cdc28d4d0d17824bb95f0b |
| ENCFF279MNV.tabix.bed.gz | 200.72 KB | 15e18e06468c476914ccee62ee2de920 |
| ENCFF279MNV.tabix.bed.gz.dvc | 106.0 B | e3cd0328850b3d93d4f99c1f5abdc655 |
| ENCFF279MNV.tabix.bed.gz.tbi | 51.1 KB | 3e580ca829b8306b5be6b83cfbb136b3 |
| ENCFF279MNV.tabix.bed.gz.tbi.dvc | 109.0 B | ed57db501c8a71cf418c277658849746 |
| genomic_resource.yaml | 4.3 KB | 1b54544652fbdcad8f4be792c2576b71 |
| genomic_resource_original.yaml | 4.15 KB | f8256cd4a486b8d24dcc9736225912ce |
| statistics/ |