Resource
| Id | TF_ChIP-seq/ENCSR000ARH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000ARH [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="EZH2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN166HHE|/analyses/ENCAN166HHE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF272WPB|/files/ENCFF272WPB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16674504 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF272WPB|/files/ENCFF272WPB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF272WPB|/files/ENCFF272WPB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.70. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF543GAK|/files/ENCFF543GAK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF543GAK|/files/ENCFF543GAK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.06. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ARH | float |
TF_ChIP-seq_ENCSR000ARH |
TF_ChIP-seq ENCSR000ARH [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="EZH2"]
|
 |
[8.55, 120] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 809509 | 0.03% | 2501 |
| chr1 | 85171 | 0.03% | 259 |
| chr2 | 74621 | 0.03% | 241 |
| chr3 | 32156 | 0.02% | 96 |
| chr4 | 42063 | 0.02% | 121 |
| chr5 | 46231 | 0.03% | 148 |
| chr6 | 51601 | 0.03% | 158 |
| chr7 | 43458 | 0.03% | 136 |
| chr8 | 31130 | 0.02% | 111 |
| chr9 | 42637 | 0.03% | 140 |
| chr10 | 45858 | 0.03% | 139 |
| chr11 | 41607 | 0.03% | 126 |
| chr12 | 29953 | 0.02% | 96 |
| chr13 | 20725 | 0.02% | 66 |
| chr14 | 29470 | 0.03% | 89 |
| chr15 | 22278 | 0.02% | 67 |
| chr16 | 16323 | 0.02% | 46 |
| chr17 | 50251 | 0.06% | 156 |
| chr18 | 16706 | 0.02% | 47 |
| chr19 | 28678 | 0.05% | 79 |
| chr20 | 28237 | 0.04% | 83 |
| chr21 | 10283 | 0.02% | 34 |
| chr22 | 18832 | 0.04% | 59 |
| chrX | 1240 | <0.01% | 4 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 2501 | 26 | 436 | 323.67 | 336 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF380TJK.bed.gz | 39.79 KB | fd7bd8fb764b03f70431855e8c0e1d12 |
| ENCFF380TJK.tabix.bed.gz | 28.84 KB | 6fbe16efb6e271064b873901a133d73d |
| ENCFF380TJK.tabix.bed.gz.tbi | 16.57 KB | 40441561c9fc918c69d3163a7b8c1032 |
| genomic_resource.yaml | 4.47 KB | 25fc8bdf3dff1e96365eb2e33a11da83 |
| statistics/ |