TF_ChIP-seq_ENCSR000ARH
TF_ChIP-seq ENCSR000ARH [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="EZH2"]
×
| Id: | TF_ChIP-seq/ENCSR000ARH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ARH [biosamplesummary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN166HHE|/analyses/ENCAN166HHE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF272WPB|/files/ENCFF272WPB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16674504 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF272WPB|/files/ENCFF272WPB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF272WPB|/files/ENCFF272WPB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.70. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF543GAK|/files/ENCFF543GAK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF543GAK|/files/ENCFF543GAK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.06. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ARH | float |
TF_ChIP-seq_ENCSR000ARH |
TF_ChIP-seq ENCSR000ARH [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="EZH2"]
|
|
[8.55, 120] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF380TJK.bed.gz | 39.79 KB | fd7bd8fb764b03f70431855e8c0e1d12 |
| ENCFF380TJK.bed.gz.dvc | 99.0 B | d750cdf0d50038031b9da77165845772 |
| ENCFF380TJK.tabix.bed.gz | 28.84 KB | 6fbe16efb6e271064b873901a133d73d |
| ENCFF380TJK.tabix.bed.gz.dvc | 105.0 B | f7c7198c0c94a068f4f370321e4c0e27 |
| ENCFF380TJK.tabix.bed.gz.tbi | 16.57 KB | 40441561c9fc918c69d3163a7b8c1032 |
| ENCFF380TJK.tabix.bed.gz.tbi.dvc | 109.0 B | 0852827b9366e175519fe111f9a22d05 |
| genomic_resource.yaml | 4.47 KB | 25fc8bdf3dff1e96365eb2e33a11da83 |
| genomic_resource_original.yaml | 4.34 KB | 553882b3b5d860b86966f158040df9db |
| statistics/ |