Resource
| Id | TF_ChIP-seq/ENCSR000ARE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000ARE [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="EZH2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN966EMB|/analyses/ENCAN966EMB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF177LBB|/files/ENCFF177LBB/}, {ENCFF743FCW|/files/ENCFF743FCW/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.07 and a self consistency ratio of 2.03. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF360MGZ|/files/ENCFF360MGZ/}, {ENCFF448YLM|/files/ENCFF448YLM/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.07 and a self consistency ratio of 2.03. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ARE | float |
TF_ChIP-seq_ENCSR000ARE |
TF_ChIP-seq ENCSR000ARE [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="EZH2"]
|
 |
[8.18, 242] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3114277 | 0.10% | 9790 |
| chr1 | 287211 | 0.12% | 892 |
| chr2 | 274707 | 0.11% | 871 |
| chr3 | 153888 | 0.08% | 479 |
| chr4 | 164962 | 0.09% | 539 |
| chr5 | 147255 | 0.08% | 448 |
| chr6 | 174573 | 0.10% | 577 |
| chr7 | 183073 | 0.11% | 602 |
| chr8 | 145075 | 0.10% | 475 |
| chr9 | 131280 | 0.09% | 383 |
| chr10 | 177233 | 0.13% | 534 |
| chr11 | 178247 | 0.13% | 571 |
| chr12 | 116042 | 0.09% | 345 |
| chr13 | 85444 | 0.07% | 273 |
| chr14 | 102893 | 0.10% | 325 |
| chr15 | 107174 | 0.11% | 349 |
| chr16 | 86819 | 0.10% | 266 |
| chr17 | 170629 | 0.20% | 542 |
| chr18 | 63821 | 0.08% | 212 |
| chr19 | 110377 | 0.19% | 341 |
| chr20 | 115872 | 0.18% | 351 |
| chr21 | 35344 | 0.08% | 111 |
| chr22 | 40694 | 0.08% | 129 |
| chrX | 61664 | 0.04% | 175 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 9790 | 1 | 2096 | 318.11 | 286 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF743FCW.bed.gz | 140.69 KB | 3dfb5f076fde87b7896b22f33633d866 |
| ENCFF743FCW.tabix.bed.gz | 110.54 KB | adabc789272fb053ce82ff7aa053be8d |
| ENCFF743FCW.tabix.bed.gz.tbi | 35.8 KB | b28de683bcaab15a05e16cbf6fa7185d |
| genomic_resource.yaml | 2.6 KB | 7016a8d67e5e61b452e0c2faf6d5716c |
| statistics/ |