TF_ChIP-seq_ENCSR000AQK
TF_ChIP-seq ENCSR000AQK [biosample_summary="Homo sapiens H1" and target="CHD1"]
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| Id: | TF_ChIP-seq/ENCSR000AQK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000AQK [biosamplesummary="Homo sapiens H1" and target="CHD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN020HYO|/analyses/ENCAN020HYO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF617RGJ|/files/ENCFF617RGJ/}, {ENCFF693GHB|/files/ENCFF693GHB/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.47 and a self consistency ratio of 6.00. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF741MOG|/files/ENCFF741MOG/}, {ENCFF735ZAF|/files/ENCFF735ZAF/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.47 and a self consistency ratio of 6.00. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF847WER|/files/ENCFF847WER/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF847WER|/files/ENCFF847WER/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000AQK | float |
TF_ChIP-seq_ENCSR000AQK |
TF_ChIP-seq ENCSR000AQK [biosample_summary="Homo sapiens H1" and target="CHD1"]
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[10.9, 327] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF617RGJ.bed.gz | 164.39 KB | 26d5177bf6655b63dcbaf3942dbc9702 |
| ENCFF617RGJ.bed.gz.dvc | 100.0 B | 8d878a21e967e998339d704fe50234c6 |
| ENCFF617RGJ.tabix.bed.gz | 125.96 KB | 4c8ee23d9235c7318a6f8d384842a792 |
| ENCFF617RGJ.tabix.bed.gz.dvc | 106.0 B | 4b86221f5e0465f32181f9f66b30e728 |
| ENCFF617RGJ.tabix.bed.gz.tbi | 56.22 KB | 7296a381fafe727f9a550d01888371eb |
| ENCFF617RGJ.tabix.bed.gz.tbi.dvc | 109.0 B | 45ec6b7a67b9d43becb7b5e9d6dad279 |
| genomic_resource.yaml | 3.87 KB | 8efccfb31374f87cbe220e2f35dc34d2 |
| genomic_resource_original.yaml | 3.78 KB | 8f089d5b3e75a5a122140a8dd8e24654 |
| statistics/ |