TF_ChIP-seq_ENCSR000AQE
TF_ChIP-seq ENCSR000AQE [biosample_summary="Homo sapiens K562" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR000AQE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000AQE [biosamplesummary="Homo sapiens K562" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN077ROX|/analyses/ENCAN077ROX/} has in progress subobject document {5c63e6b9-f26a-4133-8f25-75e64768e1a8|/documents/5c63e6b9-f26a-4133-8f25-75e64768e1a8/} audit_internal_action: Released analysis {ENCAN077ROX|/analyses/ENCAN077ROX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF988VQQ|/files/ENCFF988VQQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18847034 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF988VQQ|/files/ENCFF988VQQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF988VQQ|/files/ENCFF988VQQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF804RVA|/files/ENCFF804RVA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.54 and a self consistency ratio of 2.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000AQE | float |
TF_ChIP-seq_ENCSR000AQE |
TF_ChIP-seq ENCSR000AQE [biosample_summary="Homo sapiens K562" and target="EZH2"]
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[8.13, 152] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF804RVA.bed.gz | 36.32 KB | b64ede00c8820a24d09e4fecf3a1200f |
| ENCFF804RVA.bed.gz.dvc | 99.0 B | b98e0aced40f9467d97694dd487d214f |
| ENCFF804RVA.tabix.bed.gz | 25.67 KB | abfe021b17dbcecdf259c08fd6c8c04c |
| ENCFF804RVA.tabix.bed.gz.dvc | 105.0 B | ac2f92a0f68fe6c7ea59e60ce453e728 |
| ENCFF804RVA.tabix.bed.gz.tbi | 18.45 KB | 03330ef48e70ded182bda2f96720045d |
| ENCFF804RVA.tabix.bed.gz.tbi.dvc | 109.0 B | dcd482b8b6026f16e49105627831e377 |
| genomic_resource.yaml | 3.91 KB | fec778bfb8b1547acc9a4b145a86325c |
| genomic_resource_original.yaml | 3.81 KB | c7a9284b3a3529b3b532c4d4f25dd6ab |
| statistics/ |