Resource

Id TF_ChIP-seq/ENCSR000AQDcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000AQD [biosample_summary="Homo sapiens K562" and target="CHD1"]
Description
Labels
  • accession: ENCSR000AQD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2013-11-07T22:15:55.573092+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000AQD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: As of February 28, 2017, new mapping is required due to duplicated files.
  • target: CHD1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000AQD float

TF_ChIP-seq_ENCSR000AQD
TF_ChIP-seq ENCSR000AQD [biosample_summary="Homo sapiens K562" and target="CHD1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000AQD [21.7, 262]
n
4,405,095
mean
31.4
sd
11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 44050950.14% 10485
chr1 567047 0.23% 1377
chr2 244333 0.10% 585
chr3 221875 0.11% 525
chr4 123897 0.07% 291
chr5 187207 0.10% 454
chr6 374356 0.22% 917
chr7 273933 0.17% 668
chr8 131961 0.09% 314
chr9 142169 0.10% 330
chr10 164325 0.12% 382
chr11 231514 0.17% 550
chr12 211961 0.16% 497
chr13 57835 0.05% 125
chr14 79243 0.07% 178
chr15 121268 0.12% 280
chr16 203373 0.23% 470
chr17 223390 0.27% 533
chr18 63877 0.08% 156
chr19 310040 0.53% 736
chr20 101541 0.16% 248
chr21 63459 0.14% 144
chr22 245526 0.48% 589
chrX 60965 0.04% 136
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 10485 1 1133 420.13 504
global segment-length histogram

Files

Filename Size md5
ENCFF002CEK.bed.gz 226.35 KB 5bfc2bf2123f8f00c74dbb393c91d933
ENCFF002CEK.tabix.bed.gz 158.36 KB 8e427ede5718219cf160464b87be7035
ENCFF002CEK.tabix.bed.gz.tbi 62.26 KB b300ae74e9fda78b87af6685bdffbbfe
genomic_resource.yaml 1.54 KB 16609c13901f9cad7c79d22a53730d0f
statistics/