TF_ChIP-seq_ENCSR000AKO
TF_ChIP-seq ENCSR000AKO [biosample_summary="Homo sapiens K562" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000AKO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000AKO [biosamplesummary="Homo sapiens K562" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN082OTH|/analyses/ENCAN082OTH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN082OTH|/analyses/ENCAN082OTH/} has in progress subobject document {cfe5bda6-4b8b-4d3d-896c-62d51f4eed74|/documents/cfe5bda6-4b8b-4d3d-896c-62d51f4eed74/} audit_not_compliant: Processed alignments file {ENCFF834MPG|/files/ENCFF834MPG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 7556487 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF173QSV|/files/ENCFF173QSV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 9168532 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF834MPG|/files/ENCFF834MPG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF834MPG|/files/ENCFF834MPG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.63. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF173QSV|/files/ENCFF173QSV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF173QSV|/files/ENCFF173QSV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.27. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000AKO | float |
TF_ChIP-seq_ENCSR000AKO |
TF_ChIP-seq ENCSR000AKO [biosample_summary="Homo sapiens K562" and target="CTCF"]
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[2.81, 785] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF769AUF.bed.gz | 897.94 KB | 7d086cac19c5311a77b7e21e3d931435 |
| ENCFF769AUF.bed.gz.dvc | 100.0 B | ccd363f1b08f55ac83c8968dcc31d34e |
| ENCFF769AUF.tabix.bed.gz | 648.85 KB | f30f587fd66127ebcda5819b03484276 |
| ENCFF769AUF.tabix.bed.gz.dvc | 106.0 B | b862feb6c1a969a7e314bbe12bda9816 |
| ENCFF769AUF.tabix.bed.gz.tbi | 280.32 KB | 4cc868512636321e9ad8ed25d622a74c |
| ENCFF769AUF.tabix.bed.gz.tbi.dvc | 110.0 B | 5180a3ae6a2b8d2018bebed57660f7b8 |
| genomic_resource.yaml | 5.21 KB | 7aa8a32d39aee25f262e67fa6fde1c56 |
| genomic_resource_original.yaml | 5.12 KB | 5fae2b5639bde87ec1315f3ea6b13cca |
| statistics/ |