Resource

Id TF_ChIP-seq/ENCSR000AHFcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000AHF [biosample_summary="Homo sapiens MCF-7" and target="TAF1"]
Description
Labels
  • accession: ENCSR000AHF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001203/
  • biosample_summary: Homo sapiens MCF-7
  • date_created: 2013-09-13T13:31:29.733008-08:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000AHF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: TAF1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000AHF float

TF_ChIP-seq_ENCSR000AHF
TF_ChIP-seq ENCSR000AHF [biosample_summary="Homo sapiens MCF-7" and target="TAF1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000AHF [7.08, 389]
n
3,039,249
mean
37.5
sd
25.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 30392490.09% 9666
chr1 276191 0.11% 861
chr2 197420 0.08% 641
chr3 181342 0.09% 574
chr4 84357 0.04% 259
chr5 144000 0.08% 456
chr6 149918 0.09% 472
chr7 138158 0.09% 437
chr8 112456 0.08% 368
chr9 102818 0.07% 329
chr10 127734 0.10% 408
chr11 133658 0.10% 423
chr12 157650 0.12% 510
chr13 45442 0.04% 139
chr14 111234 0.10% 360
chr14_GL000225v1_random 404 0.19% 1
chr15 133576 0.13% 428
chr16 129184 0.14% 399
chr17 292613 0.35% 948
chr17_GL000205v2_random 404 0.22% 1
chr18 22182 0.03% 70
chr19 158735 0.27% 500
chr20 210133 0.33% 672
chr21 29155 0.06% 104
chr22 34908 0.07% 111
chr22_KI270733v1_random 404 0.22% 1
chrUn_KI270467v1 404 10.31% 1
chrX 64769 0.04% 193
3339 contigs with no values (185724044 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 9666 4 404 314.43 404
global segment-length histogram

Files

Filename Size md5
ENCFF762MGC.bed.gz 149.46 KB 5dbdc772b74deb533265ebf1c6cff53f
ENCFF762MGC.tabix.bed.gz 111.76 KB 045baab1c0f48f9f43b0fdc1ffe4596a
ENCFF762MGC.tabix.bed.gz.tbi 60.59 KB 927ba2875130516b6ebf4cd279396f3b
genomic_resource.yaml 2.02 KB ddcaa3d8ba4627ba385252116ba65d0e
statistics/