Resource

Id Histone_ChIP-seq/ENCSR999HNEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR999HNE [biosample_summary="Homo sapiens BLaER1 48 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR999HNE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 48 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:42.435420+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR999HNE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 48 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR999HNE float

Histone_ChIP-seq_ENCSR999HNE
Histone_ChIP-seq ENCSR999HNE [biosample_summary="Homo sapiens BLaER1 48 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR999HNE [1.39, 26]
n
182,584,980
mean
5.45
sd
2.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1825849805.68% 242086
chr1 12407784 4.98% 16645
chr1_KI270706v1_random 20965 11.98% 29
chr1_KI270707v1_random 4305 13.44% 7
chr1_KI270708v1_random 36829 28.84% 44
chr1_KI270709v1_random 19469 29.12% 19
chr1_KI270710v1_random 2503 6.23% 4
chr1_KI270712v1_random 5285 3.00% 4
chr1_KI270713v1_random 2712 6.66% 5
chr1_KI270714v1_random 2338 5.60% 2
chr2 13853970 5.72% 18962
chr2_KI270716v1_random 7755 5.04% 5
chr3 10673086 5.38% 15308
chr3_GL000221v1_random 9084 5.85% 20
chr4 10072777 5.30% 13871
chr4_GL000008v2_random 12497 5.96% 14
chr5 10951691 6.03% 15064
chr5_GL000208v1_random 3892 4.20% 8
chr6 9079552 5.32% 12987
chr7 11287163 7.08% 14382
chr8 11851142 8.17% 15260
chr9 6661080 4.81% 9264
chr9_KI270719v1_random 7826 4.43% 13
chr9_KI270720v1_random 2435 6.24% 7
chr10 8704662 6.51% 11716
chr11 6888607 5.10% 9220
chr12 8153759 6.12% 10527
chr13 5396602 4.72% 7836
chr14 5304194 4.96% 7056
chr14_GL000009v2_random 14725 7.30% 30
chr14_GL000194v1_random 18805 9.82% 25
chr14_GL000225v1_random 136443 64.61% 116
chr14_KI270722v1_random 30328 15.63% 44
chr14_KI270723v1_random 6644 17.43% 7
chr14_KI270724v1_random 6296 15.92% 7
chr14_KI270725v1_random 8768 5.07% 12
chr14_KI270726v1_random 314 0.72% 1
chr15 4748512 4.66% 6445
chr15_KI270727v1_random 1871 0.42% 5
chr16 4893400 5.42% 6173
chr16_KI270728v1_random 43535 2.32% 79
chr17 4213757 5.06% 5287
chr17_GL000205v2_random 9346 5.04% 14
chr17_KI270729v1_random 203232 72.37% 49
chr17_KI270730v1_random 32020 28.45% 16
chr18 4106134 5.11% 5867
chr19 9878452 16.85% 7793
chr20 3683865 5.72% 4913
chr21 2936076 6.29% 3660
chr22 2082036 4.10% 2640
chr22_KI270731v1_random 1183 0.78% 3
chr22_KI270732v1_random 3758 9.05% 4
chr22_KI270733v1_random 22926 12.75% 38
chr22_KI270735v1_random 5720 13.36% 3
chr22_KI270736v1_random 137737 75.71% 27
chr22_KI270737v1_random 59435 57.24% 45
chr22_KI270738v1_random 56052 56.40% 28
chr22_KI270739v1_random 250 0.34% 1
chrUn_GL000195v1 1137 0.62% 4
chrUn_GL000213v1 6028 3.67% 9
chrUn_GL000214v1 15737 11.43% 28
chrUn_GL000216v2 122737 69.50% 52
chrUn_GL000218v1 8385 5.20% 14
chrUn_GL000219v1 13882 7.75% 16
chrUn_GL000220v1 9498 5.87% 14
chrUn_GL000224v1 104967 58.41% 61
chrUn_KI270320v1 422 9.56% 1
chrUn_KI270322v1 938 4.37% 3
chrUn_KI270330v1 416 25.18% 1
chrUn_KI270418v1 282 13.15% 1
chrUn_KI270435v1 8006 8.61% 12
chrUn_KI270438v1 65829 58.51% 24
chrUn_KI270442v1 134472 34.30% 65
chrUn_KI270468v1 646 15.93% 1
chrUn_KI270508v1 1642 84.16% 2
chrUn_KI270509v1 254 10.96% 1
chrUn_KI270510v1 392 16.23% 1
chrUn_KI270512v1 7372 32.49% 6
chrUn_KI270515v1 335 5.27% 1
chrUn_KI270516v1 250 19.23% 1
chrUn_KI270517v1 407 12.51% 1
chrUn_KI270518v1 260 11.89% 1
chrUn_KI270519v1 28486 20.62% 44
chrUn_KI270521v1 340 4.45% 1
chrUn_KI270529v1 403 21.22% 1
chrUn_KI270538v1 2441 2.67% 6
chrUn_KI270539v1 283 28.50% 1
chrUn_KI270580v1 595 38.31% 1
chrUn_KI270583v1 506 36.14% 1
chrUn_KI270584v1 1072 23.75% 2
chrUn_KI270589v1 3476 7.82% 2
chrUn_KI270590v1 976 20.83% 2
chrUn_KI270591v1 967 16.68% 1
chrUn_KI270741v1 4814 3.06% 13
chrUn_KI270742v1 4484 2.40% 11
chrUn_KI270743v1 11473 5.45% 22
chrUn_KI270744v1 26625 15.80% 34
chrUn_KI270745v1 637 1.52% 1
chrUn_KI270746v1 397 0.60% 1
chrUn_KI270747v1 3944 1.98% 6
chrUn_KI270748v1 625 0.67% 2
chrUn_KI270749v1 4545 2.86% 4
chrUn_KI270750v1 2851 1.92% 6
chrUn_KI270751v1 12816 8.50% 23
chrUn_KI270753v1 8441 13.41% 17
chrUn_KI270754v1 21206 52.76% 14
chrUn_KI270755v1 726 1.98% 1
chrUn_KI270756v1 76375 95.96% 16
chrUn_KI270757v1 8047 11.29% 12
chrX 12812472 8.21% 19503
chrY 275079 0.48% 407
3256 contigs with no values (118490439 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 242086 250 100773 754.22 464
global segment-length histogram

Files

Filename Size md5
ENCFF826KUE.bed.gz 4.67 MB 2adffc0a6c9ea58f489bdc3f96360419
ENCFF826KUE.tabix.bed.gz 2.3 MB 73f4820e6be6e3f796ab758f828b3902
ENCFF826KUE.tabix.bed.gz.tbi 558.65 KB 307bfe0bfebb7b9d287120924769ed24
genomic_resource.yaml 3.12 KB 19268f251416ded3a13f622b92c465d9
statistics/