Resource
| Id | Histone_ChIP-seq/ENCSR998ZWM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR998ZWM [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN885CSR|/analyses/ENCAN885CSR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF455RXF|/files/ENCFF455RXF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24776921 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR998ZWM | float |
Histone_ChIP-seq_ENCSR998ZWM |
Histone_ChIP-seq ENCSR998ZWM [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K4me1"]
|
 |
[1.7, 24.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 75354300 | 2.34% | 117017 |
| chr1 | 8193253 | 3.29% | 12146 |
| chr2 | 5746250 | 2.37% | 9218 |
| chr3 | 4548536 | 2.29% | 7318 |
| chr4 | 3009329 | 1.58% | 5252 |
| chr5 | 3866183 | 2.13% | 6109 |
| chr6 | 4309716 | 2.52% | 6930 |
| chr7 | 3274326 | 2.05% | 5371 |
| chr8 | 2898996 | 2.00% | 4759 |
| chr9 | 3491132 | 2.52% | 5220 |
| chr10 | 3617469 | 2.70% | 5606 |
| chr11 | 4861652 | 3.60% | 7016 |
| chr12 | 3502910 | 2.63% | 5612 |
| chr13 | 1362948 | 1.19% | 2384 |
| chr14 | 2649659 | 2.48% | 3884 |
| chr15 | 2506068 | 2.46% | 3844 |
| chr16 | 2735196 | 3.03% | 4012 |
| chr17 | 4399847 | 5.28% | 5980 |
| chr18 | 1573543 | 1.96% | 2500 |
| chr19 | 2734260 | 4.66% | 4181 |
| chr20 | 2066494 | 3.21% | 3122 |
| chr21 | 847922 | 1.82% | 1297 |
| chr22 | 1887046 | 3.71% | 2703 |
| chrX | 1247855 | 0.80% | 2498 |
| chrY | 23710 | 0.04% | 55 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 117017 | 155 | 9828 | 643.96 | 495 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF871HAW.bed.gz | 2.51 MB | 7f367c907690ad9f19077cf3311fa251 |
| ENCFF871HAW.tabix.bed.gz | 1.16 MB | 3c98fc598c7d0acdd29f3af3e03b21e2 |
| ENCFF871HAW.tabix.bed.gz.tbi | 300.43 KB | 5e1fbfae86f5051fb3d9fb38baa1dd96 |
| genomic_resource.yaml | 2.0 KB | eaac92d3db641f59329bff3b9b2c3df9 |
| statistics/ |