Resource

Id Histone_ChIP-seq/ENCSR998QKFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR998QKF [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR998QKF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue male adult (54 years)
  • date_created: 2017-12-06T21:13:17.828440+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR998QKF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR998QKF float

Histone_ChIP-seq_ENCSR998QKF
Histone_ChIP-seq ENCSR998QKF [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR998QKF [1.32, 49]
n
31,437,938
mean
19.1
sd
9.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 314379380.98% 20727
chr1 3144804 1.26% 2098
chr1_KI270712v1_random 902 0.51% 1
chr2 2122611 0.88% 1384
chr3 1715276 0.87% 1119
chr4 1222298 0.64% 770
chr5 1470756 0.81% 918
chr6 1867175 1.09% 1204
chr7 1542820 0.97% 1048
chr8 1124392 0.77% 737
chr9 1295345 0.94% 846
chr9_KI270717v1_random 339 0.85% 1
chr10 1306924 0.98% 862
chr11 1709256 1.27% 1073
chr12 1671098 1.25% 1068
chr13 621164 0.54% 405
chr14 1047678 0.98% 680
chr15 1012754 0.99% 651
chr16 1266529 1.40% 860
chr17 1931697 2.32% 1259
chr17_GL000205v2_random 2288 1.23% 2
chr18 500265 0.62% 330
chr19 2103912 3.59% 1491
chr20 788692 1.22% 539
chr21 300586 0.64% 203
chr22 733413 1.44% 519
chrUn_GL000218v1 369 0.23% 1
chrUn_GL000219v1 2528 1.41% 3
chrUn_KI270438v1 907 0.81% 2
chrUn_KI270466v1 400 32.44% 1
chrUn_KI270467v1 1338 34.13% 2
chrX 892395 0.57% 627
chrY 37027 0.06% 23
3334 contigs with no values (128217386 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20727 216 10103 1516.76 1409
global segment-length histogram

Files

Filename Size md5
ENCFF008PXG.bed.gz 577.47 KB cc981a17f7d5e51e32f5a0776899baa0
ENCFF008PXG.tabix.bed.gz 244.42 KB dd37f33f3527b29b3faa1bbd984b3bea
ENCFF008PXG.tabix.bed.gz.tbi 139.6 KB 2909ff720ed5020c51ba8102e623fe39
genomic_resource.yaml 1.51 KB 84bdf4f342524d40742adce11c0f05a3
statistics/