Histone_ChIP-seq_ENCSR997YTW
Histone_ChIP-seq ENCSR997YTW [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR997YTW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR997YTW [biosamplesummary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (17 weeks) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN966ZBX|/analyses/ENCAN966ZBX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF767NUG|/files/ENCFF767NUG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20168275 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed redacted alignments file {ENCFF017NML|/files/ENCFF017NML/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 36064234 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF767NUG|/files/ENCFF767NUG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF767NUG|/files/ENCFF767NUG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.20. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR997YTW | float |
Histone_ChIP-seq_ENCSR997YTW |
Histone_ChIP-seq ENCSR997YTW [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K27me3"]
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[1.65, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF964CFA.bed.gz | 1.52 MB | efa0367b7849cd31c295cfd0a24e2cab |
| ENCFF964CFA.bed.gz.dvc | 101.0 B | 2e99e058335e5c28447fbddf6151fea3 |
| ENCFF964CFA.tabix.bed.gz | 818.35 KB | ab7a5e16ce2421ebc0c95ddb8a580b2c |
| ENCFF964CFA.tabix.bed.gz.dvc | 106.0 B | 9aeecf03740ad421c35a6bfb35bc48d9 |
| ENCFF964CFA.tabix.bed.gz.tbi | 179.94 KB | c287ad76ffe1a45507b72737659dbb26 |
| ENCFF964CFA.tabix.bed.gz.tbi.dvc | 110.0 B | 8134ba589bf5a90e953f2d355142c94f |
| genomic_resource.yaml | 3.75 KB | e783ba7c629d3897be4588838f7d247f |
| genomic_resource_original.yaml | 3.61 KB | dc9797cc3def9338b36ce0982d604610 |
| statistics/ |