Histone_ChIP-seq_ENCSR996GHD
Histone_ChIP-seq ENCSR996GHD [biosample_summary="Homo sapiens OCI-LY3" and target="H3K9ac"]
×
| Id: | Histone_ChIP-seq/ENCSR996GHD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR996GHD [biosamplesummary="Homo sapiens OCI-LY3" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN297ONM|/analyses/ENCAN297ONM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF145MQT|/files/ENCFF145MQT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF145MQT|/files/ENCFF145MQT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.69. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR996GHD | float |
Histone_ChIP-seq_ENCSR996GHD |
Histone_ChIP-seq ENCSR996GHD [biosample_summary="Homo sapiens OCI-LY3" and target="H3K9ac"]
|
|
[1.6, 57] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF807KQU.bed.gz | 1.43 MB | ed402db262f5043389700a40ee350d1d |
| ENCFF807KQU.bed.gz.dvc | 101.0 B | 41ec7ffe00bdf12b823ab72778d4c72c |
| ENCFF807KQU.tabix.bed.gz | 605.88 KB | a24e2307e6dda7a00a5a4c0d22918cce |
| ENCFF807KQU.tabix.bed.gz.dvc | 106.0 B | 7b788d4df74b2dc1b1bf0b01f001c06b |
| ENCFF807KQU.tabix.bed.gz.tbi | 207.66 KB | 3b0a81091ca56ffd5ead5cc6e6b438e5 |
| ENCFF807KQU.tabix.bed.gz.tbi.dvc | 110.0 B | 94e2c0a8d721ff5d7ac34e2e9c05b610 |
| genomic_resource.yaml | 2.67 KB | 8369cb7a4f565bcf3e194fb941976584 |
| genomic_resource_original.yaml | 2.56 KB | 4e2bab73b6eab57f3342903dce14de0a |
| statistics/ |