| Id: | Histone_ChIP-seq/ENCSR995UTR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR995UTR [biosamplesummary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: female adult output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN436EPE|/analyses/ENCAN436EPE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF539BXB|/files/ENCFF539BXB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 26234197 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF848RPX|/files/ENCFF848RPX/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 20474608 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF539BXB|/files/ENCFF539BXB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF539BXB|/files/ENCFF539BXB/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.78. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR995UTR | float |
Histone_ChIP-seq_ENCSR995UTR |
Histone_ChIP-seq ENCSR995UTR [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K36me3"]
|
 |
[1.7, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442LBF.bed.gz | 2.83 MB | 9e4d0b0eb2321f5aaed02f71f742749a |
| ENCFF442LBF.bed.gz.dvc | 101.0 B | 59f5d822be20bbde10b06e30b4ad25b2 |
| ENCFF442LBF.tabix.bed.gz | 1.31 MB | f6009192087deb55c625c144abfefde9 |
| ENCFF442LBF.tabix.bed.gz.dvc | 107.0 B | 2ec4207ea17d249d68248a6f0f8026d7 |
| ENCFF442LBF.tabix.bed.gz.tbi | 162.07 KB | f48e7f6aa8ebc0ba71325dad5cfb1704 |
| ENCFF442LBF.tabix.bed.gz.tbi.dvc | 110.0 B | 8ba20ada5cfdbbd6487a43a14b809644 |
| genomic_resource.yaml | 4.01 KB | d17695456104b22da3bcea01e442bcc5 |
| genomic_resource_original.yaml | 3.84 KB | 33b404ea5e454f24284f92598df3f6c0 |
| statistics/ |