Histone_ChIP-seq_ENCSR989RAL
Histone_ChIP-seq ENCSR989RAL [biosample_summary="Homo sapiens iPS-20b" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR989RAL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR989RAL [biosamplesummary="Homo sapiens iPS-20b" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN481QGZ|/analyses/ENCAN481QGZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN481QGZ|/analyses/ENCAN481QGZ/} has in progress subobject document {fe2deafa-9287-407d-8695-c55ab1e48246|/documents/fe2deafa-9287-407d-8695-c55ab1e48246/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF155QTK|/files/ENCFF155QTK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF155QTK|/files/ENCFF155QTK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR989RAL | float |
Histone_ChIP-seq_ENCSR989RAL |
Histone_ChIP-seq ENCSR989RAL [biosample_summary="Homo sapiens iPS-20b" and target="H3K4me3"]
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[1.64, 78.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF483YLD.bed.gz | 1.35 MB | 5f2c26510708aed99906bbc1afd44926 |
| ENCFF483YLD.bed.gz.dvc | 101.0 B | 618474e1d36dbfef96f6e347ac1ad8fc |
| ENCFF483YLD.tabix.bed.gz | 587.19 KB | c3b365533f7873c4860d3851bfab9268 |
| ENCFF483YLD.tabix.bed.gz.dvc | 106.0 B | d0d5342ed2f5443a8a23d2292fac699e |
| ENCFF483YLD.tabix.bed.gz.tbi | 249.14 KB | 9d064c7364b29269ac533e539102b167 |
| ENCFF483YLD.tabix.bed.gz.tbi.dvc | 110.0 B | c2cf78a6769500d4682b7604637a91ab |
| genomic_resource.yaml | 2.91 KB | 1d50f03784445ca8483ad5bb2e957303 |
| genomic_resource_original.yaml | 2.8 KB | 195fbd2cb234fe68ab265a48cab717fd |
| statistics/ |