Resource
| Id | Histone_ChIP-seq/ENCSR989POD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR989POD [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (49 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN975RMN|/analyses/ENCAN975RMN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF929MVV|/files/ENCFF929MVV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 30178359 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR989POD | float |
Histone_ChIP-seq_ENCSR989POD |
Histone_ChIP-seq ENCSR989POD [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K36me3"]
|
 |
[1.78, 27.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 106876574 | 3.32% | 153413 |
| chr1 | 10568551 | 4.25% | 14533 |
| chr2 | 8258812 | 3.41% | 12476 |
| chr3 | 6954267 | 3.51% | 10374 |
| chr4 | 4171279 | 2.19% | 6679 |
| chr5 | 5336251 | 2.94% | 8092 |
| chr6 | 4943281 | 2.89% | 7419 |
| chr7 | 4690583 | 2.94% | 7126 |
| chr8 | 3628941 | 2.50% | 5621 |
| chr9 | 4965753 | 3.59% | 6683 |
| chr10 | 5018839 | 3.75% | 7370 |
| chr11 | 5614422 | 4.16% | 7529 |
| chr12 | 5902894 | 4.43% | 8175 |
| chr13 | 2271345 | 1.99% | 3615 |
| chr14 | 3755810 | 3.51% | 5554 |
| chr15 | 4073364 | 3.99% | 5827 |
| chr16 | 4627795 | 5.12% | 6051 |
| chr17 | 5855117 | 7.03% | 7854 |
| chr18 | 1833008 | 2.28% | 3057 |
| chr19 | 5387707 | 9.19% | 6944 |
| chr20 | 3258308 | 5.06% | 4269 |
| chr21 | 1358554 | 2.91% | 1844 |
| chr22 | 2833419 | 5.58% | 3474 |
| chrX | 1568274 | 1.01% | 2847 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 153413 | 160 | 15049 | 696.66 | 465 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF553JCE.bed.gz | 2.94 MB | ab9ccc00365fa8b2b4945629141877e9 |
| ENCFF553JCE.tabix.bed.gz | 1.45 MB | 8ac84b692587d6052623e14070240180 |
| ENCFF553JCE.tabix.bed.gz.tbi | 186.92 KB | 513d929d1a1661994c81e454818e5c11 |
| genomic_resource.yaml | 2.17 KB | 1f330006da3d66a9c4ae1f70e8f6b10e |
| statistics/ |