Histone_ChIP-seq_ENCSR988QEK
Histone_ChIP-seq ENCSR988QEK [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR988QEK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR988QEK [biosamplesummary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN242HFP|/analyses/ENCAN242HFP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF086OVD|/files/ENCFF086OVD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF086OVD|/files/ENCFF086OVD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.57. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR988QEK | float |
Histone_ChIP-seq_ENCSR988QEK |
Histone_ChIP-seq ENCSR988QEK [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K9me3"]
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[1.32, 9.44] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF910XDR.bed.gz | 202.84 KB | 3969329620f9793661903b4edf4f0731 |
| ENCFF910XDR.bed.gz.dvc | 100.0 B | 9d87375f622f4f79a779c5cf5f223167 |
| ENCFF910XDR.tabix.bed.gz | 106.5 KB | d66e6a41411cc2b8ed4aee79ae755477 |
| ENCFF910XDR.tabix.bed.gz.dvc | 106.0 B | 50aed4a46cede8175426aab96e93c704 |
| ENCFF910XDR.tabix.bed.gz.tbi | 73.4 KB | fb3f0e2cd3f8dd8840486db7f493c98a |
| ENCFF910XDR.tabix.bed.gz.tbi.dvc | 109.0 B | 690c44ec15e110e25ecd1bc3488d0537 |
| genomic_resource.yaml | 2.77 KB | f7978a91bd3c85648d8ed24ef0983745 |
| genomic_resource_original.yaml | 2.63 KB | 8e0a9c6a1eb7b19444bd5d8ce9ef3879 |
| statistics/ |