Histone_ChIP-seq_ENCSR981UJA
Histone_ChIP-seq ENCSR981UJA [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR981UJA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR981UJA [biosamplesummary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (53 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN736XLF|/analyses/ENCAN736XLF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF756TNK|/files/ENCFF756TNK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18149831 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF435RWI|/files/ENCFF435RWI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF435RWI|/files/ENCFF435RWI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.42. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR981UJA | float |
Histone_ChIP-seq_ENCSR981UJA |
Histone_ChIP-seq ENCSR981UJA [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K27ac"]
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[1.52, 81.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF475YWE.bed.gz | 2.81 MB | dd48a8374b887c9decca47637f942176 |
| ENCFF475YWE.bed.gz.dvc | 101.0 B | 2502fe5399790a47cb1772cd77093c21 |
| ENCFF475YWE.tabix.bed.gz | 1.25 MB | 48d368c182de869d6dc190a72098cbcc |
| ENCFF475YWE.tabix.bed.gz.dvc | 107.0 B | 5a749deeb36f8b14d58b2d29f95a1597 |
| ENCFF475YWE.tabix.bed.gz.tbi | 285.07 KB | 50550bbade6a247d023e96e59b2c39c8 |
| ENCFF475YWE.tabix.bed.gz.tbi.dvc | 110.0 B | d25c7518cee7fb0a3ba007dd9a8937a0 |
| genomic_resource.yaml | 3.26 KB | d235668c5e88fc044aad0d48dec58039 |
| genomic_resource_original.yaml | 3.11 KB | e3afbdb8977798349491b37b7801bb55 |
| statistics/ |