Histone_ChIP-seq_ENCSR979RHZ
Histone_ChIP-seq ENCSR979RHZ [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR979RHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR979RHZ [biosamplesummary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN010KXM|/analyses/ENCAN010KXM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN010KXM|/analyses/ENCAN010KXM/} has in progress subobject document {b9fd6f16-ddd6-410f-8636-22ac22b05fc9|/documents/b9fd6f16-ddd6-410f-8636-22ac22b05fc9/} audit_not_compliant: Processed unfiltered alignments file {ENCFF361ZXB|/files/ENCFF361ZXB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27282117 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF050OLR|/files/ENCFF050OLR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12909658 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF622QVA|/files/ENCFF622QVA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF622QVA|/files/ENCFF622QVA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.30. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR979RHZ | float |
Histone_ChIP-seq_ENCSR979RHZ |
Histone_ChIP-seq ENCSR979RHZ [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K9me3"]
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[1.94, 17.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF658SDA.bed.gz | 1.08 MB | 4394ae2dbfb355a046190335dd195737 |
| ENCFF658SDA.bed.gz.dvc | 101.0 B | 0ff4719201801d750c5583b7ac4e980e |
| ENCFF658SDA.tabix.bed.gz | 558.2 KB | b3641c53a90e61dfdd31b2fec9194fda |
| ENCFF658SDA.tabix.bed.gz.dvc | 106.0 B | 0d5fb9c70689b30fc5bf8217cf074ff8 |
| ENCFF658SDA.tabix.bed.gz.tbi | 230.47 KB | e2640e9fbf631771fe0a405f5f88f7b2 |
| ENCFF658SDA.tabix.bed.gz.tbi.dvc | 110.0 B | 4b413ccbdbed79be1aea4c5df9bd5628 |
| genomic_resource.yaml | 4.11 KB | 9cf5fe59fb82448c516ebaabd182a7a6 |
| genomic_resource_original.yaml | 3.97 KB | a6fa040aa83a46d8fb17e51ac849671d |
| statistics/ |