Resource

Id Histone_ChIP-seq/ENCSR978BQIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR978BQI [biosample_summary="Homo sapiens Karpas-422" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR978BQI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005719/
  • biosample_summary: Homo sapiens Karpas-422
  • date_created: 2014-02-20T05:41:57.079227+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR978BQI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR978BQI float

Histone_ChIP-seq_ENCSR978BQI
Histone_ChIP-seq ENCSR978BQI [biosample_summary="Homo sapiens Karpas-422" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR978BQI [1.38, 6.22]
n
94,206,685
mean
2.84
sd
0.469

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 942066852.93% 174145
chr1 3904387 1.57% 7713
chr2 5664886 2.34% 10683
chr3 4928003 2.49% 10000
chr4 9667566 5.08% 18603
chr5 5125422 2.82% 10297
chr6 2918021 1.71% 6082
chr7 4975048 3.12% 9729
chr8 5536075 3.81% 10759
chr9 3278856 2.37% 6411
chr10 3276322 2.45% 6292
chr11 6415885 4.75% 9449
chr12 2646747 1.99% 5081
chr13 4374312 3.82% 8561
chr14 6577112 6.14% 9413
chr15 2868706 2.81% 5250
chr16 1686060 1.87% 3038
chr17 924264 1.11% 1645
chr18 5155017 6.41% 8984
chr19 2911309 4.97% 4202
chr20 1303880 2.02% 2518
chr21 2996228 6.41% 5541
chr22 281474 0.55% 495
chrX 6791105 4.35% 13399
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 174145 218 12578 540.97 450
global segment-length histogram

Files

Filename Size md5
ENCFF029PZQ.bed.gz 3.09 MB 8496da7c97caeb28560390910b4bbb7c
ENCFF029PZQ.tabix.bed.gz 1.6 MB 1722245e1e5518149063ed2d0278f1f5
ENCFF029PZQ.tabix.bed.gz.tbi 240.99 KB 94dcbf8ea3eb099305e3f9e1c25dba06
genomic_resource.yaml 1.6 KB 359427e0f0379f238d697c0f03de18c3
statistics/