Resource
| Id | Histone_ChIP-seq/ENCSR977CEC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR977CEC [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN716ERY|/analyses/ENCAN716ERY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF048HZR|/files/ENCFF048HZR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 37329827 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR977CEC | float |
Histone_ChIP-seq_ENCSR977CEC |
Histone_ChIP-seq ENCSR977CEC [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K27me3"]
|
![]() |
[1.24, 5.51] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 139628 | <0.01% | 360 |
| chr1 | 10750 | <0.01% | 30 |
| chr2 | 14760 | 0.01% | 41 |
| chr3 | 10415 | 0.01% | 28 |
| chr4 | 6563 | <0.01% | 17 |
| chr5 | 9304 | 0.01% | 24 |
| chr6 | 9811 | 0.01% | 26 |
| chr7 | 6787 | <0.01% | 18 |
| chr8 | 7499 | 0.01% | 22 |
| chr9 | 3412 | <0.01% | 9 |
| chr10 | 4982 | <0.01% | 12 |
| chr11 | 4104 | <0.01% | 12 |
| chr12 | 4565 | <0.01% | 14 |
| chr13 | 2279 | <0.01% | 6 |
| chr14 | 6413 | 0.01% | 19 |
| chr15 | 3225 | <0.01% | 9 |
| chr16 | 4620 | 0.01% | 11 |
| chr17 | 4141 | <0.01% | 13 |
| chr18 | 4726 | 0.01% | 13 |
| chr19 | 804 | <0.01% | 2 |
| chr20 | 4348 | 0.01% | 11 |
| chr21 | 3044 | 0.01% | 8 |
| chr22 | 1995 | <0.01% | 4 |
| chr22_KI270733v1_random | 316 | 0.18% | 1 |
| chrM | 9103 | 54.94% | 7 |
| chrUn_KI270438v1 | 518 | 0.46% | 1 |
| chrUn_KI270467v1 | 1144 | 29.18% | 2 |
| 3340 contigs with no values (342032629 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 360 | 220 | 2872 | 387.86 | 344 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF827YVW.bed.gz | 7.71 KB | de918e31ac2713b5858181d801ebd9a8 |
| ENCFF827YVW.tabix.bed.gz | 3.96 KB | 41d866fcd2bd2bfcd7e13af33421a3c5 |
| ENCFF827YVW.tabix.bed.gz.tbi | 8.05 KB | d46a36ab93c4d3113c38c781441a02b2 |
| genomic_resource.yaml | 1.99 KB | 4075db8c9c6a3b95d80dca285b9d5016 |
| statistics/ |
