Histone_ChIP-seq_ENCSR975NOU
Histone_ChIP-seq ENCSR975NOU [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR975NOU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR975NOU [biosamplesummary="Homo sapiens thyroid gland tissue male adult (54 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN807VTX|/analyses/ENCAN807VTX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465MFX|/files/ENCFF465MFX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465MFX|/files/ENCFF465MFX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR975NOU | float |
Histone_ChIP-seq_ENCSR975NOU |
Histone_ChIP-seq ENCSR975NOU [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)" and target="H3K4me3"]
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[1.72, 15.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF612FNE.bed.gz | 542.84 KB | 26f1c5b76f3acda145c9181f4a3986f2 |
| ENCFF612FNE.bed.gz.dvc | 100.0 B | 5e2031cf8c8337b891acfed552f59a1b |
| ENCFF612FNE.tabix.bed.gz | 252.5 KB | c351e97e7a3f52dc02427331c06145aa |
| ENCFF612FNE.tabix.bed.gz.dvc | 106.0 B | 53f2a6edc0341127b467b302e7929dde |
| ENCFF612FNE.tabix.bed.gz.tbi | 128.33 KB | 358b0d8a1a84e9f17087979f76f768bc |
| ENCFF612FNE.tabix.bed.gz.tbi.dvc | 110.0 B | f2c8aefd5d8cbfe094cfd681dd863b73 |
| genomic_resource.yaml | 2.75 KB | 62424c90dc4f167b4054db832607778f |
| genomic_resource_original.yaml | 2.62 KB | ceeb24d18d4bc9177c67cae57a0ea5e9 |
| statistics/ |