type: position_score
table:
  filename: ENCFF234RFS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR974EGY
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR974EGY [biosample_summary="Homo sapiens T-cell" and target="H3K9me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR974EGY [biosample_summary="Homo sapiens T-cell" and target="H3K9me3"]'
  description: "**status**: archived\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: replicated peaks\n\n**audit\\_internal\\\
    _action**: Archived analysis {ENCAN643XIA|/analyses/ENCAN643XIA/} has in progress\
    \ subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed redacted unfiltered alignments file {ENCFF011XBL|/files/ENCFF011XBL/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 5799247 mapped reads. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human\
    \ and investigated as a broad histone mark is 35 million mapped reads. The recommended\
    \ value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/})\n\n**audit\\_not\\_compliant**: Processed\
    \ redacted unfiltered alignments file {ENCFF232EVT|/files/ENCFF232EVT/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline has 6341644 mapped reads. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human\
    \ and investigated as a broad histone mark is 35 million mapped reads. The recommended\
    \ value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR974EGY
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens T-cell
    replication_type: anisogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000084/
    perturbed: false
    doi: 10.17989/ENCSR974EGY
    date_created: '2015-09-15T19:47:09.558895+00:00'
    date_released: '2013-07-31'
    submitter_comment: Experiment 5c440556-0444-485f-b554-de3aed65d05f merged into
      base.
    target: H3K9me3
