Resource

Id Histone_ChIP-seq/ENCSR972SMVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR972SMV [biosample_summary="Homo sapiens H9" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR972SMV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9
  • date_created: 2015-10-01T07:16:14.871880+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR972SMV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR972SMV float

Histone_ChIP-seq_ENCSR972SMV
Histone_ChIP-seq ENCSR972SMV [biosample_summary="Homo sapiens H9" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR972SMV [1.81, 24.3]
n
47,006,408
mean
6.29
sd
2.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 470064081.46% 40403
chr1 2713450 1.09% 2088
chr2 1256741 0.52% 1284
chr3 902817 0.46% 973
chr4 1215514 0.64% 1199
chr5 1025347 0.56% 1045
chr6 914521 0.54% 961
chr7 2361720 1.48% 1784
chr8 2453008 1.69% 1695
chr9 871545 0.63% 890
chr10 1439299 1.08% 1274
chr11 2085145 1.54% 1688
chr12 1594824 1.20% 1273
chr13 870124 0.76% 731
chr14 1655391 1.55% 1125
chr15 1047383 1.03% 904
chr16 1292899 1.43% 834
chr17 967190 1.16% 721
chr18 539303 0.67% 533
chr19 5267202 8.99% 3362
chr20 1283837 1.99% 959
chr21 758532 1.62% 580
chr22 790693 1.56% 560
chrX 13499729 8.65% 13855
chrY 200194 0.35% 85
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40403 290 36173 1163.44 868
global segment-length histogram

Files

Filename Size md5
ENCFF296PQE.bed.gz 771.43 KB 79607e729f3aedc4102d41e73b93329f
ENCFF296PQE.tabix.bed.gz 394.71 KB 014bd9812eb6a4618d84ab5f87362327
ENCFF296PQE.tabix.bed.gz.tbi 124.57 KB 92c42b9a6c3389680f9c5fe5a2ed8a44
genomic_resource.yaml 2.08 KB a0e613389e950efa716159fcebcd7e7a
statistics/