Histone_ChIP-seq_ENCSR972ETR
Histone_ChIP-seq ENCSR972ETR [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR972ETR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR972ETR [biosamplesummary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN932AMB|/analyses/ENCAN932AMB/} has in progress subobject document {6d3db066-11bb-49fd-b71a-360495c86bae|/documents/6d3db066-11bb-49fd-b71a-360495c86bae/} audit_internal_action: Released analysis {ENCAN932AMB|/analyses/ENCAN932AMB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF185CAR|/files/ENCFF185CAR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF185CAR|/files/ENCFF185CAR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR972ETR | float |
Histone_ChIP-seq_ENCSR972ETR |
Histone_ChIP-seq ENCSR972ETR [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K4me3"]
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[1.55, 23.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF082KCY.bed.gz | 1004.48 KB | 19a529d4e8b1fcbcfe91885438b1889f |
| ENCFF082KCY.bed.gz.dvc | 101.0 B | 44c9a93bd400246c49f349af60e7503f |
| ENCFF082KCY.tabix.bed.gz | 430.38 KB | c0f9de32f9d5f90757549db72e9140c3 |
| ENCFF082KCY.tabix.bed.gz.dvc | 106.0 B | 980c16a549d895f47febd97715bc68d0 |
| ENCFF082KCY.tabix.bed.gz.tbi | 193.89 KB | 812b6edab1a59dee450bb937afbc0da4 |
| ENCFF082KCY.tabix.bed.gz.tbi.dvc | 110.0 B | 0acdec145b5acbb308948c79b44800f2 |
| genomic_resource.yaml | 3.01 KB | 67e3da6969ef7d77730551b1f9a0a0f0 |
| genomic_resource_original.yaml | 2.86 KB | 45cf24a627bc1c14582437ed9bdd2a4f |
| statistics/ |