Histone_ChIP-seq_ENCSR971ETA
Histone_ChIP-seq ENCSR971ETA [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR971ETA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR971ETA [biosamplesummary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (84 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN929KQL|/analyses/ENCAN929KQL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF338HBY|/files/ENCFF338HBY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF338HBY|/files/ENCFF338HBY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR971ETA | float |
Histone_ChIP-seq_ENCSR971ETA |
Histone_ChIP-seq ENCSR971ETA [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K27ac"]
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[1.75, 77.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF722LRM.bed.gz | 1009.54 KB | 4761541b9a70f465072d00a995b914dd |
| ENCFF722LRM.bed.gz.dvc | 101.0 B | b3625d8070317fa8968f7577c774c77b |
| ENCFF722LRM.tabix.bed.gz | 495.96 KB | ed74fcc43e8016bcc11c05dcd1741fbb |
| ENCFF722LRM.tabix.bed.gz.dvc | 106.0 B | 1567940ad3f6e0b21ee5a636c80e51cb |
| ENCFF722LRM.tabix.bed.gz.tbi | 182.95 KB | 253023544f053f39bc01ea10d464c5c6 |
| ENCFF722LRM.tabix.bed.gz.tbi.dvc | 110.0 B | d9a0d42587e26761b51896cf5aa1a312 |
| genomic_resource.yaml | 2.83 KB | 5602034688ec14293efe9a8700692075 |
| genomic_resource_original.yaml | 2.68 KB | a3284142bace4b96e11c4c314b3032cc |
| statistics/ |