Histone_ChIP-seq_ENCSR967HXD
Histone_ChIP-seq ENCSR967HXD [biosample_summary="Homo sapiens H9 stably expressing HES5" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR967HXD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR967HXD [biosamplesummary="Homo sapiens H9 stably expressing HES5" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged HES5 output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN240BQK|/analyses/ENCAN240BQK/} has in progress subobject document {cf44fa62-50ae-4eb1-aeb9-6403fd645dee|/documents/cf44fa62-50ae-4eb1-aeb9-6403fd645dee/} audit_internal_action: Released analysis {ENCAN240BQK|/analyses/ENCAN240BQK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF695XNX|/files/ENCFF695XNX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 34215070 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF418IUS|/files/ENCFF418IUS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 35789340 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF695XNX|/files/ENCFF695XNX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF695XNX|/files/ENCFF695XNX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR967HXD | float |
Histone_ChIP-seq_ENCSR967HXD |
Histone_ChIP-seq ENCSR967HXD [biosample_summary="Homo sapiens H9 stably expressing HES5" and target="H3K4me1"]
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[1.57, 8.83] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF731UCU.bed.gz | 1.86 MB | 273a306191ae4a30033898177b3fe631 |
| ENCFF731UCU.bed.gz.dvc | 101.0 B | 51c99c082aad6141dcff6ad6b6b7ea43 |
| ENCFF731UCU.tabix.bed.gz | 902.99 KB | e665736febc0de293a666a5b52914883 |
| ENCFF731UCU.tabix.bed.gz.dvc | 106.0 B | d4a6b4bb0483588393511e2c91547aa5 |
| ENCFF731UCU.tabix.bed.gz.tbi | 322.39 KB | 7d7800addde9b1849f7422931debd8ee |
| ENCFF731UCU.tabix.bed.gz.tbi.dvc | 110.0 B | 7bc530a883d647d318e96f4c0960006f |
| genomic_resource.yaml | 3.96 KB | 7f2f1a820f84ae87be4a789adffa835c |
| genomic_resource_original.yaml | 3.83 KB | 7c2b7e426f20248a737d02da7893e0ad |
| statistics/ |