Resource

Id Histone_ChIP-seq/ENCSR966RWAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR966RWA [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR966RWA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:05.363870+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR966RWA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease, Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR966RWA float

Histone_ChIP-seq_ENCSR966RWA
Histone_ChIP-seq ENCSR966RWA [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR966RWA [1.9, 48.4]
n
78,990,614
mean
8.39
sd
5.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 789906142.46% 63061
chr1 8042286 3.23% 6220
chr2 5751965 2.37% 4638
chr3 4715424 2.38% 3851
chr4 3128378 1.64% 2578
chr5 4065209 2.24% 3252
chr6 4014469 2.35% 3194
chr7 3543383 2.22% 3027
chr8 3105530 2.14% 2619
chr9 3871255 2.80% 2939
chr10 4152823 3.10% 3219
chr11 4874262 3.61% 3716
chr12 3966662 2.98% 3259
chr13 1819145 1.59% 1459
chr14 2725976 2.55% 2132
chr15 2761611 2.71% 2223
chr16 2837791 3.14% 2294
chr17 4509146 5.42% 3399
chr18 1513540 1.88% 1292
chr19 3427650 5.85% 2707
chr20 2267352 3.52% 1833
chr21 851636 1.82% 672
chr22 1952325 3.84% 1525
chrX 1092796 0.70% 1013
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63061 230 50584 1252.61 856
global segment-length histogram

Files

Filename Size md5
ENCFF860TAY.bed.gz 1.32 MB e40c5151cda8ae3d6f322b1b5876da31
ENCFF860TAY.tabix.bed.gz 650.08 KB 209e31e8b234979c3b05604981fa23ef
ENCFF860TAY.tabix.bed.gz.tbi 224.09 KB b4a89829be3262ea6898cb6fd1702733
genomic_resource.yaml 1.86 KB 1721dc3cd583e8fa62bd696b8be36875
statistics/