Histone_ChIP-seq_ENCSR966HBM
Histone_ChIP-seq ENCSR966HBM [biosample_summary="Homo sapiens DOHH2" and target="H3F3A"]
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| Id: | Histone_ChIP-seq/ENCSR966HBM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR966HBM [biosamplesummary="Homo sapiens DOHH2" and target="H3F3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN255ICM|/analyses/ENCAN255ICM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF440BSH|/files/ENCFF440BSH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 20293681 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF191UNH|/files/ENCFF191UNH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF191UNH|/files/ENCFF191UNH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.46. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF440BSH|/files/ENCFF440BSH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF440BSH|/files/ENCFF440BSH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR966HBM | float |
Histone_ChIP-seq_ENCSR966HBM |
Histone_ChIP-seq ENCSR966HBM [biosample_summary="Homo sapiens DOHH2" and target="H3F3A"]
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[1.53, 14.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF626RMN.bed.gz | 1.53 MB | d4ac01f0648718a221ee72cf8aa0ac7a |
| ENCFF626RMN.bed.gz.dvc | 101.0 B | f5c4ff3c3e8e753616580936a992229c |
| ENCFF626RMN.tabix.bed.gz | 732.01 KB | 7a8b3d579dda920468915544d8b2d8a8 |
| ENCFF626RMN.tabix.bed.gz.dvc | 106.0 B | 4796a386d72f16baf8d2fce51fa33792 |
| ENCFF626RMN.tabix.bed.gz.tbi | 186.68 KB | 4d9767d7f0ff77bb7176e56b55b341e0 |
| ENCFF626RMN.tabix.bed.gz.tbi.dvc | 110.0 B | 6af43961a0c7472588bc1f069e1546d6 |
| genomic_resource.yaml | 4.64 KB | 8726f16f80b0c5a07ed8d52eea49fa2f |
| genomic_resource_original.yaml | 4.54 KB | 227bd48e4fcaa68e145cbe996602c9f0 |
| statistics/ |