Histone_ChIP-seq_ENCSR965CIV
Histone_ChIP-seq ENCSR965CIV [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR965CIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR965CIV [biosamplesummary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (86 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN861CFU|/analyses/ENCAN861CFU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF910MRN|/files/ENCFF910MRN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF910MRN|/files/ENCFF910MRN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.57. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR965CIV | float |
Histone_ChIP-seq_ENCSR965CIV |
Histone_ChIP-seq ENCSR965CIV [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)" and target="H3K4me3"]
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[1.79, 80.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF014FUG.bed.gz | 961.86 KB | fffed0c8c4e354d4af191582a5874beb |
| ENCFF014FUG.bed.gz.dvc | 100.0 B | f7f934670273f2b49627f47fe15526a9 |
| ENCFF014FUG.tabix.bed.gz | 424.68 KB | 112fb4cc582b42dc86b3971085fb0ef7 |
| ENCFF014FUG.tabix.bed.gz.dvc | 106.0 B | 79836bdb1231bddfe927e9e3a1533a95 |
| ENCFF014FUG.tabix.bed.gz.tbi | 216.25 KB | 00483485cad5892991976798e8d3afaa |
| ENCFF014FUG.tabix.bed.gz.tbi.dvc | 110.0 B | ef770925f60d4e904f28f8b56194d371 |
| genomic_resource.yaml | 2.83 KB | 905e43a4096dc07b86196f0a88f29704 |
| genomic_resource_original.yaml | 2.67 KB | c6ec6dc9fddae9e804200d66faff5f02 |
| statistics/ |