Resource

Id Histone_ChIP-seq/ENCSR963LVXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR963LVX [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR963LVX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:45.331237+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR963LVX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR963LVX float

Histone_ChIP-seq_ENCSR963LVX
Histone_ChIP-seq ENCSR963LVX [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR963LVX [1.87, 18.8]
n
39,895,412
mean
5.6
sd
2.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 398954121.24% 64536
chr1 4324811 1.74% 7002
chr2 3005550 1.24% 4892
chr3 2498356 1.26% 4085
chr4 1315144 0.69% 2162
chr5 1921128 1.06% 3192
chr6 2294584 1.34% 3738
chr7 2094929 1.31% 3451
chr8 1585283 1.09% 2613
chr9 1868763 1.35% 3015
chr10 1818435 1.36% 2926
chr11 2349585 1.74% 3725
chr12 1875508 1.41% 3103
chr13 700516 0.61% 1217
chr14 1623527 1.52% 2488
chr15 1309210 1.28% 2114
chr16 1514500 1.68% 2371
chr17 2005356 2.41% 3086
chr18 608556 0.76% 1048
chr19 2011830 3.43% 3146
chr20 1285884 2.00% 1991
chr21 414145 0.89% 702
chr22 1062778 2.09% 1685
chrX 399297 0.26% 772
chrY 7737 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64536 155 6942 618.19 474
global segment-length histogram

Files

Filename Size md5
ENCFF552UIM.bed.gz 1.25 MB decf4a35fc55a7b1ef2f6f1c18c2d636
ENCFF552UIM.tabix.bed.gz 640.47 KB ddbf1d46c8f0352bb0deee16010b0d55
ENCFF552UIM.tabix.bed.gz.tbi 180.79 KB c88d8810a415e14619c6e1c3be61fbea
genomic_resource.yaml 1.49 KB 8c3223c4831702f316ed72002ca73d34
statistics/