Histone_ChIP-seq_ENCSR962OTG
Histone_ChIP-seq ENCSR962OTG [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR962OTG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR962OTG [biosamplesummary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male child (6 years) with amyotrophic lateral sclerosis output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN324MRJ|/analyses/ENCAN324MRJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF935IQP|/files/ENCFF935IQP/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF935IQP|/files/ENCFF935IQP/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.07. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF856KJG|/files/ENCFF856KJG/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF856KJG|/files/ENCFF856KJG/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.05. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR962OTG | float |
Histone_ChIP-seq_ENCSR962OTG |
Histone_ChIP-seq ENCSR962OTG [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K4me3"]
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[1.43, 97.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF867WVM.bed.gz | 638.14 KB | 708900209801727ac8a4446157c0f340 |
| ENCFF867WVM.bed.gz.dvc | 100.0 B | 6cd62a868a33f664bd313caa2736a923 |
| ENCFF867WVM.tabix.bed.gz | 260.88 KB | 8436de04520f749a0fd0192f1757d4b9 |
| ENCFF867WVM.tabix.bed.gz.dvc | 106.0 B | 51ae3bbfb684bbb44cee14de65152183 |
| ENCFF867WVM.tabix.bed.gz.tbi | 143.78 KB | cf78d557839a6a551bf3c69934ebc9ca |
| ENCFF867WVM.tabix.bed.gz.tbi.dvc | 110.0 B | 239ad0eff8fd74109e452bfc89e0cf44 |
| genomic_resource.yaml | 4.19 KB | 37d3acd4e780d0d76740fe2fe89f3f6c |
| genomic_resource_original.yaml | 4.03 KB | a13a777049348d52592b1db330935af8 |
| statistics/ |