Histone_ChIP-seq_ENCSR962AKF
Histone_ChIP-seq ENCSR962AKF [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR962AKF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR962AKF [biosamplesummary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN181IFK|/analyses/ENCAN181IFK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF087KRI|/files/ENCFF087KRI/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF087KRI|/files/ENCFF087KRI/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR962AKF | float |
Histone_ChIP-seq_ENCSR962AKF |
Histone_ChIP-seq ENCSR962AKF [biosample_summary="Homo sapiens CD8-positive, alpha-beta memory T cell" and target="H3K4me3"]
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[1.59, 28] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986IXN.bed.gz | 892.62 KB | 97d1602ef512f9c782a641b91a8afba0 |
| ENCFF986IXN.bed.gz.dvc | 100.0 B | 2ba1b7c0f4329d3ec1cf8b2a83abe0cf |
| ENCFF986IXN.tabix.bed.gz | 388.15 KB | 1e7389fd592c954d2b71e756be602ffe |
| ENCFF986IXN.tabix.bed.gz.dvc | 106.0 B | 83251242551e8862c831d64203b6ed96 |
| ENCFF986IXN.tabix.bed.gz.tbi | 157.39 KB | 87d9871037e9cf91f94c925941d6a0d0 |
| ENCFF986IXN.tabix.bed.gz.tbi.dvc | 110.0 B | 37ed2b0d597c5f443cb4e4122e69e3e3 |
| genomic_resource.yaml | 2.8 KB | c16ddce78538cd00987978d274f45279 |
| genomic_resource_original.yaml | 2.67 KB | a753f735de86510ea27d85304348fc68 |
| statistics/ |