Resource

Id Histone_ChIP-seq/ENCSR960VRRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR960VRR [biosample_summary="Homo sapiens tibial artery tissue male adult (37 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR960VRR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007610/
  • biosample_summary: Homo sapiens tibial artery tissue male adult (37 years)
  • date_created: 2019-07-29T21:21:42.561662+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR960VRR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR960VRR float

Histone_ChIP-seq_ENCSR960VRR
Histone_ChIP-seq ENCSR960VRR [biosample_summary="Homo sapiens tibial artery tissue male adult (37 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR960VRR [1.67, 12.2]
n
80,433,126
mean
4.12
sd
1.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 804331262.50% 87051
chr1 8264620 3.32% 8490
chr2 6532671 2.70% 7202
chr3 5762529 2.91% 6418
chr4 3152288 1.66% 3866
chr5 4254505 2.34% 4833
chr6 4095744 2.40% 4876
chr7 3641722 2.29% 4142
chr8 3283264 2.26% 3745
chr9 3783721 2.73% 3928
chr10 4681328 3.50% 5088
chr11 4521203 3.35% 4547
chr12 4021890 3.02% 4480
chr13 1757523 1.54% 2091
chr14 2697085 2.52% 2824
chr15 2947199 2.89% 3168
chr16 2932069 3.25% 3042
chr17 3978664 4.78% 3891
chr18 1461087 1.82% 1650
chr19 3064212 5.23% 3005
chr20 2331443 3.62% 2362
chr21 962240 2.06% 1016
chr22 1839756 3.62% 1780
chrX 464657 0.30% 603
chrY 1706 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87051 220 21197 923.98 714
global segment-length histogram

Files

Filename Size md5
ENCFF227XWY.bed.gz 1.87 MB 0ed6e9a2703f251fea247d04e4ea23e7
ENCFF227XWY.tabix.bed.gz 913.32 KB aa824930b8ddba8af925d93b159e467d
ENCFF227XWY.tabix.bed.gz.tbi 268.05 KB e45cae818659ce97b26461f128279a76
genomic_resource.yaml 1.5 KB 6ac574b6a6e884ea0b96cf258938bd8c
statistics/