Histone_ChIP-seq_ENCSR960EVO
Histone_ChIP-seq ENCSR960EVO [biosample_summary="Homo sapiens aorta tissue female adult (30 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR960EVO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR960EVO [biosamplesummary="Homo sapiens aorta tissue female adult (30 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (30 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN647HVY|/analyses/ENCAN647HVY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN647HVY|/analyses/ENCAN647HVY/} has in progress subobject document {f139a3ca-2c2c-4b1e-8e95-cedf65080823|/documents/f139a3ca-2c2c-4b1e-8e95-cedf65080823/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF373QKG|/files/ENCFF373QKG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF373QKG|/files/ENCFF373QKG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR960EVO | float |
Histone_ChIP-seq_ENCSR960EVO |
Histone_ChIP-seq ENCSR960EVO [biosample_summary="Homo sapiens aorta tissue female adult (30 years)" and target="H3K4me3"]
|
|
[2.06, 28.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF237WYA.bed.gz | 644.08 KB | cea6b2333d45283366b68b3da91967f5 |
| ENCFF237WYA.bed.gz.dvc | 100.0 B | cad6c65d42ec7b59369f68ed5f921cdb |
| ENCFF237WYA.tabix.bed.gz | 281.85 KB | 0e3398e2d504a6276f32f1803b354a45 |
| ENCFF237WYA.tabix.bed.gz.dvc | 106.0 B | 6e1388c067d2fd9478f70b66a71ebc07 |
| ENCFF237WYA.tabix.bed.gz.tbi | 149.75 KB | 30e1d9752de520ccbbb188cd6ad878cf |
| ENCFF237WYA.tabix.bed.gz.tbi.dvc | 110.0 B | af6b002cfeaf130d210342341b105380 |
| genomic_resource.yaml | 3.16 KB | 2f333658dc737c41e7ebae5bce649274 |
| genomic_resource_original.yaml | 3.03 KB | b9c5160eb4d6a6467d8d29297a583107 |
| statistics/ |