Resource
| Id | Histone_ChIP-seq/ENCSR960AIZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR960AIZ [biosample_summary="Homo sapiens chorion tissue male embryo (16 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN994GZD|/analyses/ENCAN994GZD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF763FCZ|/files/ENCFF763FCZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 25055691 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR960AIZ | float |
Histone_ChIP-seq_ENCSR960AIZ |
Histone_ChIP-seq ENCSR960AIZ [biosample_summary="Homo sapiens chorion tissue male embryo (16 weeks)" and target="H3K36me3"]
|
 |
[1.79, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99568901 | 3.09% | 88443 |
| chr1 | 9922297 | 3.99% | 8562 |
| chr2 | 6917738 | 2.86% | 6791 |
| chr3 | 5734791 | 2.89% | 5448 |
| chr4 | 3624431 | 1.91% | 3757 |
| chr5 | 4911462 | 2.71% | 4458 |
| chr6 | 3979288 | 2.33% | 3961 |
| chr7 | 4699302 | 2.95% | 4305 |
| chr8 | 3299605 | 2.27% | 3246 |
| chr9 | 4537986 | 3.28% | 3829 |
| chr10 | 4435236 | 3.31% | 4158 |
| chr11 | 5148141 | 3.81% | 4346 |
| chr12 | 5575214 | 4.18% | 4650 |
| chr13 | 1929083 | 1.69% | 1924 |
| chr14 | 3482987 | 3.25% | 3203 |
| chr15 | 3639344 | 3.57% | 3385 |
| chr16 | 4885455 | 5.41% | 3840 |
| chr17 | 6103052 | 7.33% | 4890 |
| chr18 | 1470149 | 1.83% | 1588 |
| chr19 | 7301292 | 12.46% | 5177 |
| chr20 | 3095174 | 4.80% | 2614 |
| chr21 | 1242654 | 2.66% | 1130 |
| chr22 | 2731780 | 5.38% | 2103 |
| chrX | 880302 | 0.56% | 1042 |
| chrY | 22138 | 0.04% | 36 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 88443 | 205 | 26923 | 1125.8 | 781 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF874VYN.bed.gz | 1.63 MB | 8cc2aa7013de6eddee03148901ea2fa7 |
| ENCFF874VYN.tabix.bed.gz | 861.68 KB | a8970980f578f3f92a0a81c00f21f6ba |
| ENCFF874VYN.tabix.bed.gz.tbi | 149.64 KB | 7766aafa32afba36594bf27fadb97812 |
| genomic_resource.yaml | 2.0 KB | 861e092eaa119a65666046ae2192aac1 |
| statistics/ |