Histone_ChIP-seq_ENCSR960AAL
Histone_ChIP-seq ENCSR960AAL [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR960AAL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR960AAL [biosamplesummary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN732ZTT|/analyses/ENCAN732ZTT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN732ZTT|/analyses/ENCAN732ZTT/} has in progress subobject document {714f4f3f-1ee9-42e3-a6b0-3efaf79c5b6d|/documents/714f4f3f-1ee9-42e3-a6b0-3efaf79c5b6d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF204KGR|/files/ENCFF204KGR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR960AAL | float |
Histone_ChIP-seq_ENCSR960AAL |
Histone_ChIP-seq ENCSR960AAL [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K4me3"]
|
|
[2.27, 83.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF250ZHO.bed.gz | 805.43 KB | dd348616a266c16bdcc0965eb8c9e1b2 |
| ENCFF250ZHO.bed.gz.dvc | 100.0 B | a68be4e38c1ea470726ff82dadd46029 |
| ENCFF250ZHO.tabix.bed.gz | 339.0 KB | 7fb98975ebfb297d95b99153ed6a829a |
| ENCFF250ZHO.tabix.bed.gz.dvc | 106.0 B | 79fc5665e795430f2e368d33f0e25bc6 |
| ENCFF250ZHO.tabix.bed.gz.tbi | 179.81 KB | c89a61e9e10f70a3c95ad8cbebbf185b |
| ENCFF250ZHO.tabix.bed.gz.tbi.dvc | 110.0 B | c6aaed533f789ec0fa7f511ee44a347f |
| genomic_resource.yaml | 2.36 KB | c8045a683e59252f57bd598ee7d8e162 |
| genomic_resource_original.yaml | 2.22 KB | 557af896e6f6fb5fcfa03f074afdd36c |
| statistics/ |