type: position_score
table:
  filename: ENCFF250ZHO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR960AAL
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR960AAL [TISSUE: Homo sapiens sigmoid colon tissue male adult
    (37 years), TARGET: H3K4me3]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: male adult (37 years)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN732ZTT|/analyses/ENCAN732ZTT/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN732ZTT|/analyses/ENCAN732ZTT/}
    has in progress subobject document {714f4f3f-1ee9-42e3-a6b0-3efaf79c5b6d|/documents/714f4f3f-1ee9-42e3-a6b0-3efaf79c5b6d/}


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF204KGR|/files/ENCFF204KGR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38
    pipeline was generated from a library with PBC1 value of 0.89.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR960AAL
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: male adult (37 years)
    biosample_summary: Homo sapiens sigmoid colon tissue male adult (37 years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0001159/
    perturbed: false
    doi: 10.17989/ENCSR960AAL
    date_created: '2019-04-27T23:29:31.707686+00:00'
    date_released: '2019-09-11'
    submitter_comment: ''
    target: H3K4me3
