Histone_ChIP-seq_ENCSR958ZMM
Histone_ChIP-seq ENCSR958ZMM [biosample_summary="Homo sapiens neural cell originated from H1" and target="H4K20me1"]
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| Id: | Histone_ChIP-seq/ENCSR958ZMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR958ZMM [biosamplesummary="Homo sapiens neural cell originated from H1" and target="H4K20me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN984HRJ|/analyses/ENCAN984HRJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN984HRJ|/analyses/ENCAN984HRJ/} has in progress subobject document {ce9320b4-7c32-4e7f-bcd4-a8b9c81dba92|/documents/ce9320b4-7c32-4e7f-bcd4-a8b9c81dba92/} audit_not_compliant: Processed alignments file {ENCFF136JPJ|/files/ENCFF136JPJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 31222385 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF682KHR|/files/ENCFF682KHR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 23013539 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF682KHR|/files/ENCFF682KHR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF682KHR|/files/ENCFF682KHR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR958ZMM | float |
Histone_ChIP-seq_ENCSR958ZMM |
Histone_ChIP-seq ENCSR958ZMM [biosample_summary="Homo sapiens neural cell originated from H1" and target="H4K20me1"]
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[1.76, 13.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF609DIL.bed.gz | 150.96 KB | 9e8af02f5bcf7d7358ffc0783da94b03 |
| ENCFF609DIL.bed.gz.dvc | 100.0 B | a8f53d94717365806e6d893012ba683b |
| ENCFF609DIL.tabix.bed.gz | 74.63 KB | dd776d60e4105f25c9fdbd23dab5ce2e |
| ENCFF609DIL.tabix.bed.gz.dvc | 105.0 B | 58edb075f253fe1dd53c08c0d07e21ee |
| ENCFF609DIL.tabix.bed.gz.tbi | 31.31 KB | 646f3d014654800b4a7b526a4be481ce |
| ENCFF609DIL.tabix.bed.gz.tbi.dvc | 109.0 B | f9c0c693c62a82b074085e2dd358807c |
| genomic_resource.yaml | 4.06 KB | 9f043cee8ba7ab91fe8b319eace27bad |
| genomic_resource_original.yaml | 3.93 KB | 59f864effd54199c15cedf54a22344c7 |
| statistics/ |