Resource

Id Histone_ChIP-seq/ENCSR958CPVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR958CPV [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (84 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR958CPV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (84 years)
  • date_created: 2020-07-02T16:41:59.400602+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR958CPV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (84 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR958CPV float

Histone_ChIP-seq_ENCSR958CPV
Histone_ChIP-seq ENCSR958CPV [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (84 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR958CPV [1.92, 42.2]
n
29,922,858
mean
8.44
sd
5.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 299228580.93% 33461
chr1 3290631 1.32% 3609
chr2 2107098 0.87% 2357
chr3 1671717 0.84% 1940
chr4 861842 0.45% 975
chr5 1223727 0.67% 1354
chr6 1606183 0.94% 1765
chr7 1260607 0.79% 1442
chr8 1032424 0.71% 1183
chr9 1385079 1.00% 1604
chr10 1378993 1.03% 1537
chr11 1709010 1.27% 1824
chr12 1620431 1.22% 1770
chr13 498008 0.44% 556
chr14 1112926 1.04% 1208
chr15 985920 0.97% 1173
chr16 1180189 1.31% 1363
chr17 1955209 2.35% 2093
chr18 523872 0.65% 646
chr19 1887719 3.22% 2072
chr20 920432 1.43% 1024
chr21 351754 0.75% 435
chr22 834857 1.64% 894
chrX 506885 0.32% 619
chrY 17345 0.03% 18
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33461 200 12693 894.26 685
global segment-length histogram

Files

Filename Size md5
ENCFF729IPL.bed.gz 773.88 KB ace1e2c353c0466624d9409aceffa078
ENCFF729IPL.tabix.bed.gz 358.84 KB f0750b142e83623a32db0ff89b5d4a74
ENCFF729IPL.tabix.bed.gz.tbi 159.0 KB d838191d3b297927a203e22810f846ef
genomic_resource.yaml 1.87 KB 128bb78d6d63c566f34d51c476f5d22b
statistics/