Histone_ChIP-seq_ENCSR957GYL
Histone_ChIP-seq ENCSR957GYL [biosample_summary="Homo sapiens H9" and target="H3T11ph"]
×
| Id: | Histone_ChIP-seq/ENCSR957GYL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR957GYL [biosamplesummary="Homo sapiens H9" and target="H3T11ph"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN385TKE|/analyses/ENCAN385TKE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN385TKE|/analyses/ENCAN385TKE/} has in progress subobject document {43a5b597-d4b0-4ea8-9cc1-7c40a68dece8|/documents/43a5b597-d4b0-4ea8-9cc1-7c40a68dece8/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF076YTT|/files/ENCFF076YTT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.79. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF076YTT|/files/ENCFF076YTT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.67. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR957GYL | float |
Histone_ChIP-seq_ENCSR957GYL |
Histone_ChIP-seq ENCSR957GYL [biosample_summary="Homo sapiens H9" and target="H3T11ph"]
|
|
[1.89, 13.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF220DPH.bed.gz | 126.39 KB | e786b14ab1d2ecdfb33a9100199ea4fb |
| ENCFF220DPH.bed.gz.dvc | 100.0 B | 82546b069d97073b90b78e8098b5bdbc |
| ENCFF220DPH.tabix.bed.gz | 67.42 KB | 8037e0519e30d76dfb08f822249dd140 |
| ENCFF220DPH.tabix.bed.gz.dvc | 105.0 B | 3457bbd9c29cdae918fb87654c22613b |
| ENCFF220DPH.tabix.bed.gz.tbi | 55.07 KB | 91a35a2307c15b37f530591edc11e205 |
| ENCFF220DPH.tabix.bed.gz.tbi.dvc | 109.0 B | f689421715d60d23a1ca237c8da2a5aa |
| genomic_resource.yaml | 2.89 KB | d71586cdd2e08f2beab1bfa882ca7166 |
| genomic_resource_original.yaml | 2.79 KB | 999204c2c98d99bb5c59d87ad402911e |
| statistics/ |