Histone_ChIP-seq_ENCSR957CQH
Histone_ChIP-seq ENCSR957CQH [biosample_summary="Homo sapiens OCI-LY3" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR957CQH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR957CQH [biosamplesummary="Homo sapiens OCI-LY3" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473GOW|/analyses/ENCAN473GOW/} has in progress subobject document {2fef132e-d9b2-4a3e-b7ff-c53f5596dae7|/documents/2fef132e-d9b2-4a3e-b7ff-c53f5596dae7/} audit_internal_action: Released analysis {ENCAN473GOW|/analyses/ENCAN473GOW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF726IMU|/files/ENCFF726IMU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF726IMU|/files/ENCFF726IMU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR957CQH | float |
Histone_ChIP-seq_ENCSR957CQH |
Histone_ChIP-seq ENCSR957CQH [biosample_summary="Homo sapiens OCI-LY3" and target="H3K79me2"]
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[1.5, 46.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF638SRX.bed.gz | 1.72 MB | 1fd006c176542b49cbfc5699f9b12df6 |
| ENCFF638SRX.bed.gz.dvc | 101.0 B | a47e3f73ecc79d699244f02c7588bcfe |
| ENCFF638SRX.tabix.bed.gz | 759.35 KB | 4deab2125bc8c38549eb0cdfdcf9d76c |
| ENCFF638SRX.tabix.bed.gz.dvc | 106.0 B | ac27327139edd951746b1de985a58b77 |
| ENCFF638SRX.tabix.bed.gz.tbi | 113.08 KB | 3149fa0ae5cd929b96e6ffe306a17ae7 |
| ENCFF638SRX.tabix.bed.gz.tbi.dvc | 110.0 B | 85a235be4c791e4dbafbfc2e41d177c9 |
| genomic_resource.yaml | 2.91 KB | d8ee03b0bb00d966f5326e357f11a473 |
| genomic_resource_original.yaml | 2.8 KB | 702ae106915d8482b93f81db6a6374ee |
| statistics/ |