Histone_ChIP-seq_ENCSR956CTX
Histone_ChIP-seq ENCSR956CTX [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR956CTX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR956CTX [biosamplesummary="Homo sapiens neuronal stem cell originated from H1" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN707ESG|/analyses/ENCAN707ESG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF943BCG|/files/ENCFF943BCG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF943BCG|/files/ENCFF943BCG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR956CTX | float |
Histone_ChIP-seq_ENCSR956CTX |
Histone_ChIP-seq ENCSR956CTX [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K4me3"]
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[1.5, 45.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF480IBO.bed.gz | 1.86 MB | d462dab84bd82cfd7ea948d3051254e0 |
| ENCFF480IBO.bed.gz.dvc | 101.0 B | d38c9544cd38b064e5d9a11e6aedaebb |
| ENCFF480IBO.tabix.bed.gz | 849.3 KB | 388cd0e1e322871091a48a39dfd150b0 |
| ENCFF480IBO.tabix.bed.gz.dvc | 106.0 B | 51a6184f12a6c731af2108ff771f3f6a |
| ENCFF480IBO.tabix.bed.gz.tbi | 341.38 KB | f30a8276922942ccd4b203d2ac38b875 |
| ENCFF480IBO.tabix.bed.gz.tbi.dvc | 110.0 B | 256edad34cd522fae07f7a2f086b0d19 |
| genomic_resource.yaml | 2.74 KB | a5fefbd7b121f9bc78dc17345a3c490a |
| genomic_resource_original.yaml | 2.6 KB | 5478c10b8ef8fc90b41ff9a74e97f5da |
| statistics/ |